STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2058Hypothetical protein; Identified by similarity to GB:BAC89701.1. (255 aa)    
Predicted Functional Partners:
SPO2057
Membrane protein, putative.
 
   
 0.927
SPO0086
Lipoprotein, putative; Identified by similarity to GB:CAC41759.1.
   
    0.747
SPO2059
Identified by match to protein family HMM PF02798.
 
     0.668
SPO1268
Lipoprotein, putative.
  
     0.606
SPO2060
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
       0.572
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.572
SPO1269
Hypothetical protein; Identified by similarity to GB:BAB50411.1.
  
     0.496
SPO1739
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.437
SPO0088
Hypothetical protein; Identified by similarity to GB:BAB51963.1.
   
    0.424
SPO2571
TRAP transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
  
     0.406
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.