STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdh-1D-beta-hydroxybutyrate dehydrogenase; Identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963. (257 aa)    
Predicted Functional Partners:
dxnG
3-oxoadipate CoA-succinyl transferase, alpha subunit; Identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144.
 
 0.926
dxnH
3-oxoadipate CoA-succinyl transferase, beta subunit; Identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144.
 
 0.921
SPO1015
3-hydroxybutyrate dehydrogenase, putative; Identified by similarity to SP:O86034; match to protein family HMM PF00106.
  
  
 
0.908
SPO1959
acetoacetyl-CoA synthase; Identified by similarity to SP:Q9Z3R3; match to protein family HMM PF00501; match to protein family HMM TIGR01217.
   
 0.906
mvaB
hydroxymethylglutaryl-CoA lyase; Identified by similarity to SP:P13703; match to protein family HMM PF00682.
  
 
 0.906
SPO2064
Phospholipase, patatin-like family; Identified by match to protein family HMM PF01734.
 
 
 0.703
SPO2679
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
  
 0.466
SPO1932
Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.431
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128.
 
 
 0.409
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.