STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2066ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. (604 aa)    
Predicted Functional Partners:
yejB
Oligopeptide/dipeptide uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.872
yejE
Oligopeptide/dipeptide uptake family ABC transporter, permease protein; Identified by similarity to SP:P33915; match to protein family HMM PF00528.
 
  
 0.844
yejF
Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P33916; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.763
SPO2552
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.601
SPO0098
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.542
SPO0561
ABC transporter; 'initially identified as a pseudogene, expression verified by proteomics'; Belongs to the ABC transporter superfamily.
 
  
 0.526
SPO1213
Oligopeptide ABC transporter, ATP-binding protein; Substrate assignment partly based on location in oligopeptide ABC transporter gene cluster; identified by similarity to SP:P75796; match to protein family HMM PF00005.
 
  
 0.497
SPO2067
Hypothetical protein; Identified by similarity to GB:BAC46738.1.
       0.476
yejA
Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
  
  
 
0.456
naaB
N-acetyltaurine ABC transporter, permease protein; Identified by similarity to SP:P42062; PMID: 21757489.
  
 0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.