STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2068DNA-binding protein, putative; Identified by match to protein family HMM PF01381. (207 aa)    
Predicted Functional Partners:
SPO2069
Benzoate-coenzyme A ligase, putative; Identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501.
  
    0.646
SPO0423
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
   
 0.615
SPO2070
Identified by match to protein family HMM PF01323.
       0.612
SPO3403
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
  
 0.566
SPO0141
DNA binding protein, putative; Identified by match to protein family HMM PF01381.
  
  
 0.558
SPO2071
Drug resistance transporter, Bcr/CflA subfamily; Identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM TIGR00710.
       0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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