STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2070Identified by match to protein family HMM PF01323. (218 aa)    
Predicted Functional Partners:
SPO2069
Benzoate-coenzyme A ligase, putative; Identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501.
       0.812
SPO1276
Identified by match to protein family HMM PF03960; Belongs to the ArsC family.
   
 
 0.662
arsC-1
Arsenate reductase; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014.
   
 
 0.662
SPO2068
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
       0.631
SPO2071
Drug resistance transporter, Bcr/CflA subfamily; Identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM TIGR00710.
  
   0.614
SPO2072
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.459
SPO2073
Hypothetical protein; Identified by Glimmer2; putative.
       0.448
SPO1563
Identified by match to protein family HMM PF01152.
  
  
 0.405
SPO3139
Hypothetical protein.
  
  
 0.405
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.