STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2075Hypothetical protein; Identified by similarity to GB:AAL26882.1. (174 aa)    
Predicted Functional Partners:
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.766
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.765
SPO2513
Hypothetical protein; Identified by similarity to GB:CAE27057.1.
  
     0.762
SPO2738
Lipoprotein, putative.
  
     0.757
SPO0311
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.746
SPO1241
Hypothetical protein; Identified by similarity to GB:AAK23300.1.
  
     0.741
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
     0.738
SPO0951
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.734
hemB
Porphobilinogen synthase; Identified by similarity to SP:Q59643; match to protein family HMM PF00490; Belongs to the ALAD family.
       0.724
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.720
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.