Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO2077Twin-arginine translocation pathway signal sequence domain protein, putative. (190 aa)    
Predicted Functional Partners:
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.699
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
 
     0.656
hemB
Porphobilinogen synthase; Identified by similarity to SP:Q59643; match to protein family HMM PF00490; Belongs to the ALAD family.
       0.644
SPO1756
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
  
    0.602
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.584
SPO2078
Identified by similarity to SP:P07941; match to protein family HMM PF01804.
 
     0.563
kpsE
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family.
   
    0.543
SPO2079
Na(+)/H(+) antiporter-like protein.
  
    0.531
SPO0373
Helicase, ATP-dependent, putative.
  
     0.516
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.474
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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