STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2078Identified by similarity to SP:P07941; match to protein family HMM PF01804. (822 aa)    
Predicted Functional Partners:
SPO2079
Na(+)/H(+) antiporter-like protein.
       0.776
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.633
SPO2239
Hypothetical protein; Identified by similarity to GB:AAN30050.1.
 
     0.602
SPO0791
M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.
  
  
 0.570
SPO3129
Hypothetical protein; Identified by similarity to GB:AAK22332.1.
  
     0.570
SPO2077
Twin-arginine translocation pathway signal sequence domain protein, putative.
 
     0.566
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.540
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.531
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
  
 0.504
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.481
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.