STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2084Hypothetical protein; Identified by Glimmer2; putative. (171 aa)    
Predicted Functional Partners:
SPO0074
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.718
SPO3430
Outer membrane porin; Identified by similarity to GB:CAA70599.1.
  
     0.689
SPO0460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.630
SPO0945
Identified by match to protein family HMM PF05170.
  
     0.589
trkA
Trk system potassium uptake protein TrkA; Identified by similarity to SP:P39448; match to protein family HMM PF02080; match to protein family HMM PF02254.
       0.587
trkH-2
Trk system potassium uptake protein TrkH; Identified by similarity to SP:P21166; match to protein family HMM PF02386.
       0.586
SPO2135
Hypothetical protein; Identified by similarity to GB:BAC50222.1.
  
     0.532
SPO1310
Hypothetical protein; Identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049.
  
     0.517
SPO1427
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.510
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.503
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.