STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2106Hypothetical protein; Identified by similarity to GB:CAE27296.1. (384 aa)    
Predicted Functional Partners:
SPO2107
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.803
SPO2105
Transcriptional regulator, LysR family; Identified by similarity to SP:P52677; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.705
SPO1983
Hypothetical protein; Identified by similarity to PIR:AB3305.
  
    0.671
recA
RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.506
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
  
     0.471
SPO2261
Major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.
  
  
 0.470
SPO3868
Hypothetical protein; Identified by similarity to GB:AAM48718.1.
  
  
 0.442
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.412
SPO0081
Hypothetical protein; Identified by similarity to GB:AAM48708.1.
  
     0.401
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.