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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2108Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family. (514 aa)    
Predicted Functional Partners:
tmm
Trimethylamine (TMA) monooxygenase; Identified by similarity to PIR:JC7986.
     
  0.900
SPO2160
Corrinoid methyltransferase protein, putative; Identified by similarity to SP:O93657; match to protein family HMM PF02310; match to protein family HMM PF02607.
   
 0.787
SPO2041
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.
 
     0.783
SPO2162
Hypothetical protein; Identified by similarity to GB:BAB48654.1.
 
     0.783
SPO1861
Hypothetical protein; Identified by similarity to GB:BAB48658.1.
 
     0.782
SPO1863
Pterin-binding enzyme domain protein; Identified by match to protein family HMM PF00809.
 
     0.777
SPO1862
metFprotein-like protein; Identified by similarity to PIR:B97532.
 
    0.724
SPO1884
Identified by match to protein family HMM PF02574.
 
     0.720
SPO2522
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.596
SPO1265
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.582
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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