Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
SPO2111Outer membrane transporter, OMPP1/FadL/TodX family; Identified by match to protein family HMM PF03349. (379 aa)    
Predicted Functional Partners:
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.832
bamA
Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.832
SPO2113
Hypothetical protein; Identified by Glimmer2; putative.
       0.697
SPO2112
Transmembrane drug/metabolite transporter family protein; Identified by match to protein family HMM PF00892.
     
 0.639
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.546
SPO2110
Membrane protein, putative; Identified by match to protein family HMM PF00892.
     
 0.541
SPO2329
PQQ enzyme repeat family protein; Identified by match to protein family HMM PF01011.
    
   0.495
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
 
  
 0.464
SPO1159
Hypothetical protein; Identified by similarity to GB:AAN29556.1.
 
    0.452
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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