Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2113Hypothetical protein; Identified by Glimmer2; putative. (307 aa)    
Predicted Functional Partners:
SPO2112
Transmembrane drug/metabolite transporter family protein; Identified by match to protein family HMM PF00892.
  
   0.901
SPO2111
Outer membrane transporter, OMPP1/FadL/TodX family; Identified by match to protein family HMM PF03349.
       0.697
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.574
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
     0.560
SPO2985
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.554
SPO0373
Helicase, ATP-dependent, putative.
 
   
 0.540
SPO2986
Tellurite resistance protein; Identified by similarity to GB:AAB93480.1; Belongs to the TelA family.
  
     0.503
SPO2110
Membrane protein, putative; Identified by match to protein family HMM PF00892.
   
   0.443
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.418
SPO1931
Acyl carrier protein, putative; Identified by similarity to SP:P20804; match to protein family HMM PF00550.
 
 
 0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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