Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
SPO2117Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600. (153 aa)    
Predicted Functional Partners:
SPO2116
Identified by match to protein family HMM PF00597.
       0.836
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
 
 
 0.659
SPO3446
Thiol:disulfide interchange protein, DsbA family; Identified by match to protein family HMM PF01323.
 
 
 0.646
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.599
SPO2591
27 kDa outer membrane protein, putative; Identified by similarity to PIR:A49232; match to protein family HMM PF01323.
  
 
 0.590
SPO3566
Hypothetical protein; Identified by similarity to GB:CAC47907.1.
  
     0.555
SPO1033
Hypothetical protein; Identified by similarity to GB:BAB50739.1.
  
     0.508
SPO3431
Hypothetical protein; Identified by similarity to GB:AAK25710.1.
  
     0.482
SPO0132
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
 
 0.465
SPO1498
Fumarate hydratase, class I, putative; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.460
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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