STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnAAlkylphosphonate utilization operon protein PhnA; Identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686. (111 aa)    
Predicted Functional Partners:
SPO3058
Identified by match to protein family HMM PF00916; match to protein family HMM PF01740.
 
  
 0.590
ddsA
Decaprenyl diphosphate synthase; Identified by similarity to GB:CAD24417.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
      0.519
SPO2120
Identified by match to protein family HMM PF02274.
       0.481
arcB
Ornithine cyclodeaminase; Identified by similarity to SP:P09773; match to protein family HMM PF02423.
       0.478
rocF
Arginase; Identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229; Belongs to the arginase family.
       0.467
phnH
Alkylphosphonate utilization protein PhnH; Identified by similarity to SP:P16686.
     
 0.465
phnJ
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
     
 0.451
phnI
Alkylphosphonate utilization protein PhnI; Identified by similarity to SP:P16687.
     
 0.449
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.