STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2123Identified by match to protein family HMM PF01844. (194 aa)    
Predicted Functional Partners:
SPO1224
Hypothetical protein; Identified by similarity to GB:BAB66386.1.
   
 
 0.695
SPO0910
Hypothetical protein; Identified by similarity to GB:CAE29805.1.
 
    0.609
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
    0.533
SPO2124
RNA pseudouridylate synthase; Identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
       0.496
SPO3451
Modification methylase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.489
SPO2127
DNA-3-methyladenine glycosylase II, putative; Identified by match to protein family HMM PF00730.
       0.422
SPO2126
Identified by match to protein family HMM PF02230.
       0.406
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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