aspC-3 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

aspC-3

Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155. (395 aa)

Predicted Functional Partners:

speA

0.905

rocF

0.902

argH

0.818

SPO3749

0.728

SPO3539

0.609

gltB

0.523

cysS

0.482

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO3539	aspC-3	SPO3539	SPO2132	Prephenate dehydratase; Identified by similarity to PIR:AC3490; match to protein family HMM PF00800.	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.609
SPO3539	gltB	SPO3539	SPO3768	Prephenate dehydratase; Identified by similarity to PIR:AC3490; match to protein family HMM PF00800.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.458
SPO3749	aspC-3	SPO3749	SPO2132	Class II aldolase/adducin N-terminal domain protein; Identified by match to protein family HMM PF00596.	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.728
argH	aspC-3	SPO0332	SPO2132	Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.818
argH	gltB	SPO0332	SPO3768	Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.678
argH	rocF	SPO0332	SPO2119	Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Arginase; Identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229; Belongs to the arginase family.	0.832
argH	speA	SPO0332	SPO0602	Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.	0.832
aspC-3	SPO3539	SPO2132	SPO3539	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	Prephenate dehydratase; Identified by similarity to PIR:AC3490; match to protein family HMM PF00800.	0.609
aspC-3	SPO3749	SPO2132	SPO3749	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	Class II aldolase/adducin N-terminal domain protein; Identified by match to protein family HMM PF00596.	0.728
aspC-3	argH	SPO2132	SPO0332	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.	0.818
aspC-3	cysS	SPO2132	SPO2131	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	cysteinyl-tRNA synthetase; Identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.482
aspC-3	gltB	SPO2132	SPO3768	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.523
aspC-3	rocF	SPO2132	SPO2119	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	Arginase; Identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229; Belongs to the arginase family.	0.902
aspC-3	speA	SPO2132	SPO0602	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.	0.905
cysS	aspC-3	SPO2131	SPO2132	cysteinyl-tRNA synthetase; Identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.482
gltB	SPO3539	SPO3768	SPO3539	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	Prephenate dehydratase; Identified by similarity to PIR:AC3490; match to protein family HMM PF00800.	0.458
gltB	argH	SPO3768	SPO0332	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.	0.678
gltB	aspC-3	SPO3768	SPO2132	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.523
rocF	argH	SPO2119	SPO0332	Arginase; Identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229; Belongs to the arginase family.	Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.	0.832
rocF	aspC-3	SPO2119	SPO2132	Arginase; Identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229; Belongs to the arginase family.	Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.	0.902

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Co-occurrence

Experiments

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About