STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2134Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family. (514 aa)    
Predicted Functional Partners:
tmm
Trimethylamine (TMA) monooxygenase; Identified by similarity to PIR:JC7986.
     
  0.900
SPO3400
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
  
     0.721
SPO3739
Identified by match to protein family HMM PF01968; match to protein family HMM PF05378.
  
     0.685
SPO2041
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.
 
     0.663
SPO3396
FAD dependent oxidoreductase/aminomethyl transferase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.
  
     0.575
SPO1861
Hypothetical protein; Identified by similarity to GB:BAB48658.1.
 
     0.558
SPO2160
Corrinoid methyltransferase protein, putative; Identified by similarity to SP:O93657; match to protein family HMM PF02310; match to protein family HMM PF02607.
   
 0.541
SPO2162
Hypothetical protein; Identified by similarity to GB:BAB48654.1.
 
     0.523
SPO3197
Hypothetical protein; Identified by similarity to GB:BAB54274.1.
  
     0.454
SPO2859
3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.
  
     0.429
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.