Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2148Hypothetical protein; Identified by Glimmer2; putative. (481 aa)    
Predicted Functional Partners:
SPO1320
Lipoprotein, putative.
  
     0.741
SPO2652
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.722
SPO1241
Hypothetical protein; Identified by similarity to GB:AAK23300.1.
  
     0.714
SPO2776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.712
trpG
Anthranilate synthase component II; Identified by similarity to PIR:A01122; match to protein family HMM PF00117; match to protein family HMM TIGR00566.
 
     0.707
SPO3868
Hypothetical protein; Identified by similarity to GB:AAM48718.1.
 
    0.703
SPO2773
Lipoprotein, putative.
  
     0.688
SPO1742
Hypothetical protein; Identified by similarity to GB:BAB54226.1.
  
     0.684
SPO2166
Lipoprotein, putative.
  
     0.674
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
       0.668
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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