Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2161Hypothetical protein; Identified by similarity to PIR:T03518. (346 aa)    
Predicted Functional Partners:
SPO2352
Type I secretion target repeat protein; Identified by similarity to SP:P55127; match to protein family HMM PF00353.
 
 
 0.891
SPO0035
Identified by match to protein family HMM PF02485.
  
     0.757
SPO3318
Hypothetical protein; Identified by similarity to GB:AAH10441.1.
  
    0.709
SPO3319
epsK domain protein; Identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485.
  
   
 0.708
SPO1897
Hypothetical protein; Identified by similarity to PIR:AF3633.
  
     0.694
SPO1263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.672
SPO0036
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
  
   
 0.671
kpsS
Capsular polysaccharide export protein KpsS; Identified by similarity to SP:P42218; match to protein family HMM PF05159.
  
     0.665
SPO1769
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.660
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.642
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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