SPO2165 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO2165

Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657. (136 aa)

Predicted Functional Partners:

sufS

0.988

sufB

0.906

SPO2017

0.901

sufC

0.891

SPO1916

0.807

SPO2166

0.673

SPO3178

0.660

SPO2619

0.556

SPO0589

0.405

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0589	SPO2165	SPO0589	SPO2165	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	0.405
SPO0589	SPO2619	SPO0589	SPO2619	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	Hypothetical protein; Identified by similarity to GB:AAK23834.1; match to protein family HMM PF01883.	0.531
SPO1916	SPO2017	SPO1916	SPO2017	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	0.752
SPO1916	SPO2165	SPO1916	SPO2165	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	0.807
SPO1916	sufB	SPO1916	SPO2023	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	FeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980.	0.735
SPO1916	sufC	SPO1916	SPO2018	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.	0.868
SPO2017	SPO1916	SPO2017	SPO1916	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	0.752
SPO2017	SPO2165	SPO2017	SPO2165	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	0.901
SPO2017	SPO2619	SPO2017	SPO2619	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	Hypothetical protein; Identified by similarity to GB:AAK23834.1; match to protein family HMM PF01883.	0.924
SPO2017	SPO3178	SPO2017	SPO3178	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	Hypothetical protein.	0.740
SPO2017	sufB	SPO2017	SPO2023	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	FeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980.	0.999
SPO2017	sufC	SPO2017	SPO2018	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.	0.999
SPO2017	sufS	SPO2017	SPO2014	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.996
SPO2165	SPO0589	SPO2165	SPO0589	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	0.405
SPO2165	SPO1916	SPO2165	SPO1916	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	0.807
SPO2165	SPO2017	SPO2165	SPO2017	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.	0.901
SPO2165	SPO2166	SPO2165	SPO2166	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	Lipoprotein, putative.	0.673
SPO2165	SPO2619	SPO2165	SPO2619	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	Hypothetical protein; Identified by similarity to GB:AAK23834.1; match to protein family HMM PF01883.	0.556
SPO2165	SPO3178	SPO2165	SPO3178	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	Hypothetical protein.	0.660
SPO2165	sufB	SPO2165	SPO2023	Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.	FeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980.	0.906

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About