STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2166Lipoprotein, putative. (174 aa)    
Predicted Functional Partners:
SPO3372
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.714
SPO2925
Sporulation related protein; 'Novel gene detected by proteogenomics, SPO_PG029; identified in over 20 other Roseobacter strains'.
  
     0.693
SPO2148
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.674
SPO2165
Fe-S metabolism associated family protein; Identified by match to protein family HMM PF02657.
       0.673
SPO1866
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.639
SPO0074
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.624
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
     0.615
SPO2651
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
     0.612
SPO2773
Lipoprotein, putative.
  
     0.605
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.597
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.