Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
acuCAcetoin utilization protein AcuC; Identified by similarity to SP:P39067; match to protein family HMM PF00850. (368 aa)    
Predicted Functional Partners:
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
   
 
 0.729
SPO2176
Membrane protein, putative; Identified by similarity to SP:P77535; match to protein family HMM PF01594.
       0.709
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
   
 0.638
SPO3323
Hypothetical protein; Identified by similarity to GB:CAC46974.1.
   
 0.633
SPO2178
Cardiolipin synthase; Identified by similarity to SP:O66043; match to protein family HMM PF00614; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
       0.618
SPO3742
Glutathione peroxidase famly protein; Identified by match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.
      0.610
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
    
 0.599
SPO0621
Ankrin repeat protein.
   
 0.598
SPO3597
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01593.
   
 0.591
SPO2324
Hypothetical protein; Identified by similarity to GB:BAB50081.1.
  
 0.586
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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