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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2182Permease, putative; Identified by match to protein family HMM PF02687. (804 aa)    
Predicted Functional Partners:
SPO2181
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.986
SPO2183
Hypothetical protein; Identified by similarity to GB:AAK90829.1.
     0.970
lolD
Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.772
SPO1495
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.760
SPO3415
Outer membrane lipoprotein carrier protein LolA, putative; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.673
SPO2180
Hypothetical protein; Identified by Glimmer2; putative.
       0.567
SPO2015
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.523
SPO1310
Hypothetical protein; Identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049.
  
     0.482
SPO2818
Hypothetical protein; Identified by similarity to GB:CAE26946.1.
   
    0.481
SPO0460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.435
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.