Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2188Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (139 aa)    
Predicted Functional Partners:
SPO2592
Beta-lactamase, putative; Identified by similarity to SP:P14489.
  
     0.490
SPO2189
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
       0.448
SPO2187
TRAP transporter solute receptor, TAXI family; Identified by similarity to SP:P12920; match to protein family HMM TIGR02122.
       0.433
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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