STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2195Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891. (380 aa)    
Predicted Functional Partners:
SPO2196
Diaminopropionate ammonia-lyase; Identified by similarity to SP:P40817; match to protein family HMM PF00291; match to protein family HMM TIGR01747.
  
    0.782
hutI
Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
     
 0.497
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.496
hutF
Formiminoglutamate deiminase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.
       0.495
hutH
Histidine ammonia-lyase; Identified by similarity to SP:P21310; match to protein family HMM PF00221; match to protein family HMM TIGR01225; Belongs to the PAL/histidase family.
       0.488
hutG
N-formylglutamate amidohydrolase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017.
       0.482
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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