Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2196Diaminopropionate ammonia-lyase; Identified by similarity to SP:P40817; match to protein family HMM PF00291; match to protein family HMM TIGR01747. (397 aa)    
Predicted Functional Partners:
SPO1781
Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
  
 0.887
SPO2195
Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891.
  
    0.781
SPO3304
Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
  
 0.662
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
  
 
 0.594
hutF
Formiminoglutamate deiminase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.
  
  
 0.547
hutH
Histidine ammonia-lyase; Identified by similarity to SP:P21310; match to protein family HMM PF00221; match to protein family HMM TIGR01225; Belongs to the PAL/histidase family.
  
  
 0.531
SPO2556
N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
  
 0.526
SPO0365
Hypothetical protein; Identified by similarity to PIR:G97525.
     0.525
hutI
Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
  
  
 0.525
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
     
 0.517
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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