STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2208Hypothetical protein; Identified by similarity to GB:BAB53466.1. (281 aa)    
Predicted Functional Partners:
SPO2341
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
 
     0.761
SPO1245
ABC transporter, permease protein; Identified by match to protein family HMM PF00664.
 
     0.686
SPO2209
Glutamate--cysteine ligase family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
    0.647
SPO2746
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.600
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
     
 0.557
SPO3511
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.550
SPO0905
Hypothetical protein; Identified by similarity to PIR:T03518.
  
     0.526
SPO2207
Hypothetical protein; Identified by Glimmer2; putative.
       0.508
SPO1883
Hypothetical protein; Identified by similarity to SP:O43464.
  
     0.503
SPO0576
Transcriptional regulator, TetR family; Identified by similarity to GB:AAS05297.1.
  
     0.498
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.