mmsB-1 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mmsB-1

3-hydroxyisobutyrate dehydrogenase; Identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family. (290 aa)

Predicted Functional Partners:

SPO2212

0.996

mmsA

0.946

SPO2859

0.922

SPO0792

0.919

fabJ-1

0.918

SPO0097

0.915

aasadh

0.915

SPO3368

0.915

SPO3382

0.915

SPO2211

0.902

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0097	SPO0792	SPO0097	SPO0792	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	0.914
SPO0097	SPO2859	SPO0097	SPO2859	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.	0.915
SPO0097	fabJ-1	SPO0097	SPO2920	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.918
SPO0097	mmsA	SPO0097	SPO2203	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Methylmalonate-semialdehyde dehydrogenase; Identified by similarity to SP:P28810; match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.924
SPO0097	mmsB-1	SPO0097	SPO2213	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	3-hydroxyisobutyrate dehydrogenase; Identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family.	0.915
SPO0792	SPO0097	SPO0792	SPO0097	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.914
SPO0792	SPO2212	SPO0792	SPO2212	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	Identified by match to protein family HMM PF00378.	0.591
SPO0792	SPO2859	SPO0792	SPO2859	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.	0.927
SPO0792	SPO3368	SPO0792	SPO3368	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.914
SPO0792	SPO3382	SPO0792	SPO3382	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	Identified by match to protein family HMM PF00171.	0.914
SPO0792	aasadh	SPO0792	SPO0235	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	Alpha-aminoadipic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.914
SPO0792	fabJ-1	SPO0792	SPO2920	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.918
SPO0792	mmsA	SPO0792	SPO2203	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	Methylmalonate-semialdehyde dehydrogenase; Identified by similarity to SP:P28810; match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.937
SPO0792	mmsB-1	SPO0792	SPO2213	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	3-hydroxyisobutyrate dehydrogenase; Identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family.	0.919
SPO2211	SPO2212	SPO2211	SPO2212	acyl-CoA dehydrogenase; Identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Identified by match to protein family HMM PF00378.	0.937
SPO2211	fabJ-1	SPO2211	SPO2920	acyl-CoA dehydrogenase; Identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.740
SPO2211	mmsB-1	SPO2211	SPO2213	acyl-CoA dehydrogenase; Identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	3-hydroxyisobutyrate dehydrogenase; Identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family.	0.902
SPO2212	SPO0792	SPO2212	SPO0792	Identified by match to protein family HMM PF00378.	6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873.	0.591
SPO2212	SPO2211	SPO2212	SPO2211	Identified by match to protein family HMM PF00378.	acyl-CoA dehydrogenase; Identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.937
SPO2212	mmsB-1	SPO2212	SPO2213	Identified by match to protein family HMM PF00378.	3-hydroxyisobutyrate dehydrogenase; Identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family.	0.996

page 1 of 4

Server load: medium (58%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About