Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO2215 | SPO2216 | SPO2215 | SPO2216 | Identified by match to protein family HMM PF00903. | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | 0.615 |
| SPO2215 | SPO2217 | SPO2215 | SPO2217 | Identified by match to protein family HMM PF00903. | Excinuclease; 'Novel gene detected by proteogenomics, SPO_PG033; similar gene identified in less than 5 other Roseobacter strains'. | 0.435 |
| SPO2215 | betC-2 | SPO2215 | SPO2214 | Identified by match to protein family HMM PF00903. | Choline sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884. | 0.617 |
| SPO2215 | nuoD | SPO2215 | SPO2782 | Identified by match to protein family HMM PF00903. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.404 |
| SPO2215 | nuoI | SPO2215 | SPO2770 | Identified by match to protein family HMM PF00903. | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.495 |
| SPO2215 | sdhC | SPO2215 | SPO0358 | Identified by match to protein family HMM PF00903. | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127. | 0.409 |
| SPO2216 | SPO2215 | SPO2216 | SPO2215 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Identified by match to protein family HMM PF00903. | 0.615 |
| SPO2216 | SPO2217 | SPO2216 | SPO2217 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Excinuclease; 'Novel gene detected by proteogenomics, SPO_PG033; similar gene identified in less than 5 other Roseobacter strains'. | 0.547 |
| SPO2216 | betC-2 | SPO2216 | SPO2214 | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | Choline sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884. | 0.477 |
| SPO2217 | SPO2215 | SPO2217 | SPO2215 | Excinuclease; 'Novel gene detected by proteogenomics, SPO_PG033; similar gene identified in less than 5 other Roseobacter strains'. | Identified by match to protein family HMM PF00903. | 0.435 |
| SPO2217 | SPO2216 | SPO2217 | SPO2216 | Excinuclease; 'Novel gene detected by proteogenomics, SPO_PG033; similar gene identified in less than 5 other Roseobacter strains'. | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | 0.547 |
| betC-2 | SPO2215 | SPO2214 | SPO2215 | Choline sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884. | Identified by match to protein family HMM PF00903. | 0.617 |
| betC-2 | SPO2216 | SPO2214 | SPO2216 | Choline sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884. | DNA-binding protein, putative; Identified by match to protein family HMM PF01381. | 0.477 |
| nuoD | SPO2215 | SPO2782 | SPO2215 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | Identified by match to protein family HMM PF00903. | 0.404 |
| nuoD | nuoI | SPO2782 | SPO2770 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.999 |
| nuoD | sdhC | SPO2782 | SPO0358 | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127. | 0.896 |
| nuoI | SPO2215 | SPO2770 | SPO2215 | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | Identified by match to protein family HMM PF00903. | 0.495 |
| nuoI | nuoD | SPO2770 | SPO2782 | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.999 |
| nuoI | sdhC | SPO2770 | SPO0358 | NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127. | 0.873 |
| sdhC | SPO2215 | SPO0358 | SPO2215 | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127. | Identified by match to protein family HMM PF00903. | 0.409 |
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