Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO2227Hypothetical protein; Identified by similarity to GB:BAC49590.1. (1140 aa)    
Predicted Functional Partners:
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.733
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.706
SPO3540
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG032; identified in over 20 other Roseobacter strains'.
  
     0.705
SPO2228
Identified by match to protein family HMM PF00578.
       0.694
SPO2229
Hypothetical protein; Identified by similarity to PIR:G97580; match to protein family HMM PF04305.
       0.694
SPO2230
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
    0.680
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.668
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
 
     0.646
SPO0718
Hypothetical protein; Identified by similarity to GB:AAK08138.1.
  
     0.629
SPO2456
PPIC-type PPIASE domain protein.
  
     0.626
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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