STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2231Identified by match to protein family HMM PF04519. (171 aa)    
Predicted Functional Partners:
SPO2230
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
   
 0.927
SPO2228
Identified by match to protein family HMM PF00578.
     
 0.793
SPO2229
Hypothetical protein; Identified by similarity to PIR:G97580; match to protein family HMM PF04305.
       0.772
SPO2227
Hypothetical protein; Identified by similarity to GB:BAC49590.1.
       0.602
SPO3129
Hypothetical protein; Identified by similarity to GB:AAK22332.1.
  
     0.581
mreC
Rod shape-determining protein MreC; Identified by similarity to SP:P16926; match to protein family HMM PF04085; match to protein family HMM TIGR00219.
 
     0.558
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.551
pbpA
Penicillin-binding protein 2; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717.
 
   
 0.462
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.443
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.442
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.