STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2263Hypothetical protein; Identified by Glimmer2; putative. (76 aa)    
Predicted Functional Partners:
SPO2264
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
 
     0.891
SPO2262
Phage prohead protease, HK97 family; Identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543.
 
     0.877
SPO2260
Hypothetical protein; Identified by similarity to GB:AAN29521.1; match to protein family HMM TIGR02215.
 
     0.859
SPO2261
Major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.
 
     0.819
SPO2258
Hypothetical protein; Identified by similarity to GB:AAN29524.1.
 
     0.817
SPO2255
Hypothetical protein; Identified by similarity to GB:CAE27342.1.
 
     0.794
SPO2259
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
 
     0.789
SPO2256
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.754
SPO2257
Major tail protein, TP901-1 family; Identified by match to protein family HMM TIGR02126.
 
     0.729
SPO2266
Terminase, large subunit, putative; Identified by similarity to GB:AAF13179.1.
       0.703
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.