STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2284Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464. (157 aa)    
Predicted Functional Partners:
SPO1362
Dihydroneopterin aldolase, putative; Identified by match to protein family HMM TIGR00526.
  
   
 0.600
SPO0884
Membrane protein, putative; Identified by match to protein family HMM PF03824; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.514
SPO2296
Hypothetical protein.
  
   
 0.506
SPO3258
Glycosyl hydrolase, family 25; Identified by match to protein family HMM PF01183.
  
  
 0.487
SPO0883
Hypothetical protein; Identified by similarity to GB:CAE26317.1.
  
     0.468
SPO1177
Hypothetical protein; Identified by similarity to GB:BAB50586.1; match to protein family HMM PF06568.
  
     0.468
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.458
SPO0867
Hypothetical protein; Identified by similarity to GB:AAN29006.1; match to protein family HMM PF04357.
 
     0.453
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.445
nnrD
YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]
 
     0.423
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.