STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2287Autoinducer synthesis protein; Identified by match to protein family HMM PF00765. (286 aa)    
Predicted Functional Partners:
luxR-2
Autoinducer-binding transcriptional regulator LuxR; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.
 
  
 0.911
luxR-1
Autoinducer-binding transcriptional regulator LuxR; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.
 
  
 0.654
SPO3816
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.489
SPO1866
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.483
SPO2285
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
       0.439
SPO2341
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
  
     0.422
SPO2776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.419
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
      
 0.412
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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