STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2290Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG028; identified in over 20 other Roseobacter strains'. (368 aa)    
Predicted Functional Partners:
SPO0557
Mechanosensitive ion channel family protein.
  
     0.646
SPO1909
Hypothetical protein; Identified by similarity to PIR:AB2272.
  
     0.639
SPO0549
Hypothetical protein; Identified by similarity to PIR:G97668.
  
     0.637
SPO3727
VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.
   
 
 0.621
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
 
    0.593
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
 
    0.585
SPO0286
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.578
SPO0562
Hypothetical protein; Identified by similarity to GB:BAB50200.1.
  
     0.577
SPO0729
Hypothetical protein; Identified by similarity to GB:AAK22291.1.
  
     0.521
SPO2942
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.516
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.