Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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dddPDMSP lyase; Identified by match to protein family HMM PF00557. (393 aa)    
Predicted Functional Partners:
dmdA
DmdA; Involved in the assimilation of dimethylsulphoniopropionate (DMSP), an important compound in the fixation of carbon in marine phytoplankton, by mediating demethylation of dimethlysulfonioproprionate (DMSP) to methyl-mercaptopropionate (MMPA). The intracellular concentration of DMSP is estimated to be 70 mM. Belongs to the GcvT family. DmdA subfamily.
 
 0.951
dddW
DMSP lyase; Able to cleave dimethlysulfonioproprionate (DMSP), releasing dimethyl sulfide (DMS) and acrylate. DMS is the principal form by which sulfur is transported from oceans to the atmosphere.
  
 
 0.943
dddQ
DMSP lyase; May act as a dimethlysulfonioproprionate (DMSP) in vitro, releasing dimethyl sulfide (DMS). DMS is the principal form by which sulfur is transported from oceans to the atmosphere. The real activity of the protein is however subject to debate and it is unclear whether it constitutes a real dimethlysulfonioproprionate lyase in vivo (Probable).
  
 
 0.943
SPO1441
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
  
     0.671
SPO2353
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.633
SPO1439
DNA binding protein, putative; Identified by match to protein family HMM PF01381.
 
     0.560
SPO1308
Hypothetical protein; Identified by similarity to PIR:F83007.
  
     0.511
SPO1658
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
 
   
 0.427
SPO1585
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375.
  
     0.419
SPO2298
Hypothetical protein; Identified by similarity to GB:BAC90287.1.
       0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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