STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2334CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (542 aa)    
Predicted Functional Partners:
SPO3511
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.624
SPO2335
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.574
SPO0110
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.
  
  
 0.539
SPO0840
Chain length determinant protein, putative; Identified by match to protein family HMM PF02706.
 
     0.514
SPO3293
Hypothetical protein; Identified by similarity to GB:AAM36995.1.
  
     0.504
SPO2580
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
SPO3864
Hypothetical protein; Identified by similarity to PIR:H84070.
  
     0.481
SPO1510
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
  
 0.479
SPO0286
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.466
SPO3260
Methyltransferase-like protein; Identified by similarity to GB:AAD44211.1.
 
   
 0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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