SPO2335 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO2335

ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (609 aa)

Predicted Functional Partners:

potA

0.899

SPO1835

0.728

SPO2336

0.707

hemH

0.654

SPO2937

0.607

SPO2334

0.574

upgC

0.571

SPO2337

0.554

lpxK

0.547

senC

0.531

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1835	SPO2335	SPO1835	SPO2335	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.728
SPO1835	potA	SPO1835	SPO1609	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporter, ATP-binding component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.435
SPO1835	upgC	SPO1835	SPO0237	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.	0.562
SPO2334	SPO2335	SPO2334	SPO2335	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.574
SPO2334	SPO2336	SPO2334	SPO2336	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	lysM domain protein; Identified by match to protein family HMM PF01476.	0.433
SPO2335	SPO1835	SPO2335	SPO1835	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.728
SPO2335	SPO2334	SPO2335	SPO2334	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.574
SPO2335	SPO2336	SPO2335	SPO2336	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	lysM domain protein; Identified by match to protein family HMM PF01476.	0.707
SPO2335	SPO2337	SPO2335	SPO2337	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.	0.554
SPO2335	SPO2937	SPO2335	SPO2937	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Identified by match to protein family HMM PF02630.	0.607
SPO2335	hemH	SPO2335	SPO0073	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	0.654
SPO2335	lpxK	SPO2335	SPO3445	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.547
SPO2335	potA	SPO2335	SPO1609	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Spermidine/putrescine ABC transporter, ATP-binding component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.899
SPO2335	senC	SPO2335	SPO3866	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Regulatory protein SenC; Identified by similarity to SP:Q52720; match to protein family HMM PF02630.	0.531
SPO2335	upgC	SPO2335	SPO0237	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.	0.571
SPO2336	SPO2334	SPO2336	SPO2334	lysM domain protein; Identified by match to protein family HMM PF01476.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.433
SPO2336	SPO2335	SPO2336	SPO2335	lysM domain protein; Identified by match to protein family HMM PF01476.	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.707
SPO2336	SPO2337	SPO2336	SPO2337	lysM domain protein; Identified by match to protein family HMM PF01476.	Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.	0.679
SPO2337	SPO2335	SPO2337	SPO2335	Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.554
SPO2337	SPO2336	SPO2337	SPO2336	Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.	lysM domain protein; Identified by match to protein family HMM PF01476.	0.679

page 1 of 2

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About