STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2336lysM domain protein; Identified by match to protein family HMM PF01476. (552 aa)    
Predicted Functional Partners:
SPO2335
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.707
SPO2337
Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.
       0.679
SPO2951
Hypothetical protein; Identified by similarity to PIR:G97655; match to protein family HMM PF03724.
  
    0.562
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.540
SPO3852
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.537
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
  
 0.479
SPO0221
Hypothetical protein; Identified by similarity to GB:CAE38612.1.
   
  
 0.470
SPO3172
Hypothetical protein; Identified by similarity to GB:BAC46776.1.
  
     0.468
SPO1381
Hypothetical protein; Identified by similarity to PIR:E98182.
  
     0.464
SPO2334
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
       0.433
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.