STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2341Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444. (250 aa)    
Predicted Functional Partners:
SPO2208
Hypothetical protein; Identified by similarity to GB:BAB53466.1.
 
     0.761
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
 
 
 0.721
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
 
 
 0.717
SPO3864
Hypothetical protein; Identified by similarity to PIR:H84070.
 
     0.715
SPO1016
Hypothetical protein; Identified by Glimmer2; putative.
 
 
   0.679
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
  
 0.616
SPO3511
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.616
SPO2019
exoV domain protein; Identified by similarity to GB:AAA16052.1.
 
 
 
 0.613
SPO0621
Ankrin repeat protein.
  
 0.604
SPO1245
ABC transporter, permease protein; Identified by match to protein family HMM PF00664.
  
 
 0.594
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.