Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2346Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267. (109 aa)    
Predicted Functional Partners:
SPO2344
Sarcosine oxidase, gamma subunit family; Identified by similarity to SP:Q46338; match to protein family HMM PF04268.
 
 0.999
SPO2345
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 0.998
SPO2348
Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373.
 
 0.983
SPO1746
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 
 0.960
SPO1586
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 
 0.959
SPO0635
Aminomethyl transferase family protein; Belongs to the GcvT family.
 
 0.947
SPO0544
Aminomethyl transferase family protein; Belongs to the GcvT family.
 
 0.928
SPO1592
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
 0.927
SPO3327
Creatinase; Identified by similarity to SP:P38488; match to protein family HMM PF00557; match to protein family HMM PF01321.
  
  
  0.926
SPO0207
Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.
 
 0.920
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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