STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cycHCytochrome c-type biogenesis protein CycH; Identified by similarity to SP:P45400. (411 aa)    
Predicted Functional Partners:
ccmF
Cytochrome c-type biogenesis protein CcmF; Identified by similarity to SP:Q00500; match to protein family HMM PF01578; match to protein family HMM TIGR00353.
 
 
 0.888
SPO2351
Hypothetical protein; Identified by similarity to GB:BAB48126.1; match to protein family HMM PF06945.
 
     0.849
SPO2350
Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
       0.836
SPO1881
Cytochrome c biogenesis family protein; Possible subunit of a heme lyase.
 
  
 0.823
SPO2314
Periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; Identified by match to protein family HMM TIGR00385.
 
  
 0.793
SPO0317
TPR domain protein; Identified by similarity to GB:CAE26481.1; match to protein family HMM PF00515.
 
 
 0.683
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
  
     0.678
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
  
 0.650
SPO3202
Hypothetical protein; Identified by similarity to PIR:G97485.
 
     0.529
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.522
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.