Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO0296 | SPO2350 | SPO0296 | SPO2350 | Hypothetical protein; Identified by similarity to GB:BAC46757.1; match to protein family HMM PF02622; Belongs to the UPF0301 (AlgH) family. | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.787 |
| SPO0847 | SPO2350 | SPO0847 | SPO2350 | Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733. | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.462 |
| SPO0847 | alaS | SPO0847 | SPO2033 | Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.529 |
| SPO0847 | gmk | SPO0847 | SPO1945 | Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.417 |
| SPO0847 | miaA | SPO0847 | SPO1661 | Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.528 |
| SPO0847 | topA | SPO0847 | SPO3079 | Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.696 |
| SPO2348 | SPO2350 | SPO2348 | SPO2350 | Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373. | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.519 |
| SPO2348 | SPO2351 | SPO2348 | SPO2351 | Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373. | Hypothetical protein; Identified by similarity to GB:BAB48126.1; match to protein family HMM PF06945. | 0.501 |
| SPO2348 | cycH | SPO2348 | SPO2349 | Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373. | Cytochrome c-type biogenesis protein CycH; Identified by similarity to SP:P45400. | 0.518 |
| SPO2350 | SPO0296 | SPO2350 | SPO0296 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Hypothetical protein; Identified by similarity to GB:BAC46757.1; match to protein family HMM PF02622; Belongs to the UPF0301 (AlgH) family. | 0.787 |
| SPO2350 | SPO0847 | SPO2350 | SPO0847 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733. | 0.462 |
| SPO2350 | SPO2348 | SPO2350 | SPO2348 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373. | 0.519 |
| SPO2350 | SPO2351 | SPO2350 | SPO2351 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Hypothetical protein; Identified by similarity to GB:BAB48126.1; match to protein family HMM PF06945. | 0.842 |
| SPO2350 | alaS | SPO2350 | SPO2033 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.663 |
| SPO2350 | cycH | SPO2350 | SPO2349 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Cytochrome c-type biogenesis protein CycH; Identified by similarity to SP:P45400. | 0.861 |
| SPO2350 | gmk | SPO2350 | SPO1945 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.440 |
| SPO2350 | ispDF | SPO2350 | SPO2090 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF); In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily. | 0.501 |
| SPO2350 | miaA | SPO2350 | SPO1661 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.575 |
| SPO2350 | topA | SPO2350 | SPO3079 | Putative protein TIGR00250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.586 |
| SPO2351 | SPO2348 | SPO2351 | SPO2348 | Hypothetical protein; Identified by similarity to GB:BAB48126.1; match to protein family HMM PF06945. | Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373. | 0.501 |
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