STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2353Hypothetical protein; Identified by Glimmer2; putative. (261 aa)    
Predicted Functional Partners:
SPO2354
Identified by match to protein family HMM PF01925.
       0.835
dddP
DMSP lyase; Identified by match to protein family HMM PF00557.
  
     0.633
SPO2327
Fatty acid desaturase; Identified by match to protein family HMM PF00487.
  
     0.496
SPO2352
Type I secretion target repeat protein; Identified by similarity to SP:P55127; match to protein family HMM PF00353.
       0.481
SPO1585
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375.
  
     0.426
iseR
Isethionate dissimilation regulator; Identified by match to protein family HMM PF01614; PMID: 19933343.
       0.426
SPO0915
Hypothetical protein; Identified by similarity to PIR:AB2631.
  
     0.423
dusA
tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
       0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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