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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iseRIsethionate dissimilation regulator; Identified by match to protein family HMM PF01614; PMID: 19933343. (268 aa)    
Predicted Functional Partners:
iseL
Isethionate TRAP transporter; Identified by match to protein family HMM PF04290; PMID: 19933343.
 
     0.882
iseM
Isethionate TRAP transporter; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; PMID: 19933343.
 
     0.850
iseK
Isethionate TRAP transporter; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409; PMID: 19933343.
 
   
 0.814
SPO3661
Identified by match to protein family HMM PF02682.
  
    0.664
SPO3660
Urea amidolyase-like protein.
  
    0.586
SPO2354
Identified by match to protein family HMM PF01925.
  
    0.430
SPO2353
Hypothetical protein; Identified by Glimmer2; putative.
       0.426
xsc
Sulfoacetaldehyde acetyltransferase; Identified by similarity to SP:Q84H44; match to protein family HMM PF00205; match to protein family HMM PF02776; PMID: 16541231; Belongs to the TPP enzyme family.
 
     0.421
pdhR
Pyruvate dehydrogenase complex repressor; Identified by similarity to SP:P06957; match to protein family HMM PF00392.
 
  
 0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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