Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
iseKIsethionate TRAP transporter; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409; PMID: 19933343. (410 aa)    
Predicted Functional Partners:
iseL
Isethionate TRAP transporter; Identified by match to protein family HMM PF04290; PMID: 19933343.
 
  
 0.899
iseM
Isethionate TRAP transporter; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; PMID: 19933343.
 
  
 0.880
iseR
Isethionate dissimilation regulator; Identified by match to protein family HMM PF01614; PMID: 19933343.
 
     0.814
iseJ
Isethionate dehydrogenase; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199; PMID: 19933343.
 
   
 0.688
hpsL
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
  
 0.653
SPO1817
Membrane protein, putative; Identified by match to protein family HMM PF01925.
  
     0.566
SPO0456
Hypothetical protein.
  
     0.549
SPO1113
TRAP transporter, transmembrane protein, putative; Assignment based partly on membership in a TRAP-T gene trio; identified by similarity to GB:CAE33493.1.
 
  
 0.413
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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