STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2368Identified by match to protein family HMM PF02690. (535 aa)    
Predicted Functional Partners:
SPO2361
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
     0.795
SPO2369
DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
     0.681
SPO2366
Amino acid ABC transporter, permease protein; Identified by similarity to SP:Q52665; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
     0.616
SPO2367
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666; match to protein family HMM PF00005.
       0.610
amt-1
Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.
     
 0.600
soxX
Monoheme cytochrome c SoxX; Identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034.
      
 0.575
SPO2365
Amino acid ABC transporter, permease protein; Identified by similarity to SP:Q52664; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
       0.566
amt-2
Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.
     
 0.559
SPO2364
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:Q52663.
   
   0.474
serB-1
Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.
 
     0.470
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.