Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2370Identified by similarity to SP:P30144; match to protein family HMM PF01235; match to protein family HMM TIGR00835. (528 aa)    
Predicted Functional Partners:
SPO2371
Identified by match to protein family HMM PF00582.
    0.982
SPO0874
Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801.
 
  
 0.595
SPO1208
Voltage-gated chloride channel family protein; Identified by match to protein family HMM PF00654.
  
    0.551
SPO2372
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
       0.525
flgF
Flagellar basal-body rod protein FlgF; Identified by similarity to SP:P23446; match to protein family HMM PF06429.
    
   0.401
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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