STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2382Identified by similarity to GB:CAE42344.1; match to protein family HMM PF03401. (317 aa)    
Predicted Functional Partners:
SPO2384
Identified by match to protein family HMM PF01970.
 
  
 0.953
SPO0771
Identified by match to protein family HMM PF01970.
 
  
 0.864
SPO1075
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
  
 0.864
SPO0184
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
  
 0.863
SPO0186
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
  
     0.746
SPO2383
Membrane protein, putative.
       0.675
SPO2385
Benzaldehyde lyase, putative; Identified by similarity to SP:P51853; match to protein family HMM PF00205; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
       0.640
SPO2386
Hypothetical protein; Identified by similarity to GB:AAM35187.1.
       0.640
SPO2387
Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
       0.635
SPO0185
Membrane protein, putative.
  
  
 0.595
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.